Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs3012362 chr6:170450647 G/C 1.68E-5 286 13.17 28.17 25.37 KM Plot
KIRP rs3012371 chr6:170455927 C/G 0.00017 280 18.02 26.83 25.6 KM Plot
KIRP rs3012461 chr6:170448601 A/G 1.32E-6 284 13.05 28.88 25.02 KM Plot
KIRP rs3025096 chr11:102705047 CAG/C 1.42E-5 283 25.55 27.73 10.97 KM Plot
KIRP rs3026691 chr10:43540004 G/A 4.74E-5 287 25.63 25.7 11.43 KM Plot
KIRP rs3026692 chr10:43540651 C/T 5.44E-5 289 26 23.63 11.43 KM Plot
KIRP rs3026695 chr10:43542235 C/T 5.0E-5 289 25.63 25.7 11.43 KM Plot
KIRP rs3026700 chr10:43543676 G/A 4.99E-5 287 25.63 25.7 11.43 KM Plot
KIRP rs3068130 chr5:156444863 T/TCA 1.58E-7 287 12.78 25.18 26.2 KM Plot
KIRP rs3068136 chr5:156444866 T/TAAC 1.58E-7 287 12.78 25.18 26.2 KM Plot
KIRP rs3071944 chr1:231482687 C/CAA 5.94E-5 279 22.17 26.3 24.8 KM Plot
KIRP rs3084095 chr17:30317007 A/AGTCTCGCT 2.84E-6 287 26.6 24.3 12.77 KM Plot
KIRP rs3084718 chr17:30318561 C/CTT 9.72E-12 286 26.7 23.1 10.37 KM Plot
KIRP rs310664 chr20:62209205 T/C 4.98E-7 279 10.83 41.33 25.57 KM Plot
KIRP rs310668 chr20:62211524 T/C 5.57E-7 276 10.83 41.37 25.57 KM Plot